Next-generation phenomics for the Tree of Life

نویسندگان

  • J. Gordon Burleigh
  • Kenzley Alphonse
  • Andrew J Alverson
  • Holly M Bik
  • Carrine Blank
  • Andrea L Cirranello
  • Hong Cui
  • Marymegan Daly
  • Thomas G Dietterich
  • Gail Gasparich
  • Jed Irvine
  • Matthew Julius
  • Seth Kaufman
  • Edith Law
  • Jing Liu
  • Lisa Moore
  • Maureen A O'Leary
  • Maria Passarotti
  • Sonali Ranade
  • Nancy B Simmons
  • Dennis W. Stevenson
  • Robert W Thacker
  • Edward C Theriot
  • Sinisa Todorovic
  • Paúl M. Velazco
  • Ramona L Walls
  • Joanna M Wolfe
  • Mengjie Yu
چکیده

The phenotype represents a critical interface between the genome and the environment in which organisms live and evolve. Phenotypic characters also are a rich source of biodiversity data for tree building, and they enable scientists to reconstruct the evolutionary history of organisms, including most fossil taxa, for which genetic data are unavailable. Therefore, phenotypic data are necessary for building a comprehensive Tree of Life. In contrast to recent advances in molecular sequencing, which has become faster and cheaper through recent technological advances, phenotypic data collection remains often prohibitively slow and expensive. The next-generation phenomics project is a collaborative, multidisciplinary effort to leverage advances in image analysis, crowdsourcing, and natural language processing to develop and implement novel approaches for discovering and scoring the phenome, the collection of phentotypic characters for a species. This research represents a new approach to data collection that has the potential to transform phylogenetics research and to enable rapid advances in constructing the Tree of Life. Our goal is to assemble large phenomic datasets built using new methods and to provide the public and scientific community with tools for phenomic data assembly that will enable rapid and automated study of phenotypes across the Tree of Life.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Using Data Mining and Three Decision Tree Algorithms to Optimize the Repair and Maintenance Process

The purpose of this research is to predict the failure of devices using a data mining tool. For this purpose, at the outset, an appropriate database consists of 392 records of ongoing failures in a pharmaceutical company in 1394, in the next step, by analyzing 9 characteristics and type of failure as a database class, analyzes have been used. In this regard, three decision tree algorithms have ...

متن کامل

روشی نوین برای تشخیص خطوط بحرانی با پتانسیل ایجاد خروج های پی ‌در‌پی در شبکه ‌های قدرت

Abstract: Blackouts are among the main threats to the security of electric power systems. Cascading failures are known as the most important agent for creating blackouts. Transmission lines are the basic equipment of power networks that their outage can make subsequent cascading outages. In this paper, based on the application of decision tree a new approach is proposed for online identificatio...

متن کامل

Omics studies of citrus, grape and rosaceae fruit trees

Recent advance of bioinformatics and analytical apparatuses such as next generation DNA sequencer (NGS) and mass spectrometer (MS) has brought a big wave of comprehensive study to biology. Comprehensive study targeting all genes, transcripts (RNAs), proteins, metabolites, hormones, ions or phenotypes is called genomics, transcriptomics, proteomics, metabolomics, hormonomics, ionomics or phenomi...

متن کامل

Healthy Generation Components on Acquisition, Application, and Transferring Values to Next Generations According to Islamic Views and Genetics

Background and purpose: Generational health analysis on the acquisition, application, and transfer of intergenerational values is an important issue from the perspective of religion and genetics. Healthy generation means generational solidarity and lack of disruption or crisis in generations despite generational differences. The purpose of this study was to identify the common points and soluti...

متن کامل

نقش درخت زندگی در فرش های ترکمنی (با تاکید بر نقوش درخت در فرهنگ اسلامی و تمدن های باستانی)

In Islam the “Tree of Life” is named as Sedreh or Tuba and the followers of Islam believe that this tree is grown in Heaven; therefore it is an interesting subject for artistic innovative. In Turkmen terminology “tree of life” is called “Yashaish bagh”. In this study we have made an effort to evaluate the symbol of the Tree and the “Tree of Life”,...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره 5  شماره 

صفحات  -

تاریخ انتشار 2013